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Bjarki Eldon's Projects

beta-xi-sim icon beta-xi-sim

A simulator for ancestries of multiple unlinked loci driven by Beta-Xi-coalescents with exponential population growth.

coalescents icon coalescents

Scripts for simulating coalescents and analysing the output

discrete_trees icon discrete_trees

Simulate trees and gene genealogies from the discrete population

durrett_schweinsberg_expected_sfs icon durrett_schweinsberg_expected_sfs

C code for computing exact expected branch length spectrum of a Lambda-coalescent, in particular Example 2.4 in Durrett and Schweinsberg (2005)

evolution icon evolution

cweb code for estimating time to high frequency for the allelic type with highest fitness

evolution_diploid_population icon evolution_diploid_population

Evolution of a diploid population evolving under a form of viability selection and (optionally) sweepstakes reproduction

fixation_many_sites icon fixation_many_sites

fixation at arbitrarily many linked or unlinked sites in a diploid population evolving according to random sweepstakes, randomly occurring bottlenecks, and viability selection

forward icon forward

Forward simulation of a diploid population evolving under recurrent bottlenecks and selection

genomic icon genomic

Genomic simulators for simulating coalescent models for the whole genome

genomicxibeta icon genomicxibeta

Genomic coalescent simulator for genomic gene genealogies associated with the Xi-Beta(2-a,a) coalescent

hybrid-lambda icon hybrid-lambda

Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process.

mathematical-models-in-evolutionary-ecology icon mathematical-models-in-evolutionary-ecology

A special issue in MDPI Mathematics on mathematical models in ecology or evolution or population genetics, or comparing current models to population genomic data. We are accepting submissions, and in particular welcome contributions directed towards a broad audience.

msprime icon msprime

A reimplementation of Hudson's classical ms simulator for modern data sets.

tskit icon tskit

tskit provides a C and Python API for accessing, analysing and creating tree sequences - a highly efficient way of storing a set of related DNA sequences.

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