Comments (2)
Hi @JaeAeich: Obviously the workflow engines configured for the deployment you are working on are wrong:
Supported workflow engines: {'additionalProp1': {'workflow_type_version': ['string']}, 'additionalProp2': {'workflow_type_version': ['string']}, 'additionalProp3': {'workflow_type_version': ['string']}}
This looks like JSON schema / OpenAPI dummy data.
Actually, proWES is really not done - the controllers just aren't really implemented yet. So this may actually be working "as expected" 😒
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TLDR
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 1823, in full_dispatch_request
rv = self.dispatch_request()
File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 1799, in dispatch_request
return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)
File "/usr/local/lib/python3.10/site-packages/connexion/decorators/decorator.py", line 68, in wrapper
response = function(request)
File "/usr/local/lib/python3.10/site-packages/connexion/decorators/uri_parsing.py", line 149, in wrapper
response = function(request)
File "/usr/local/lib/python3.10/site-packages/connexion/decorators/validation.py", line 196, in wrapper
response = function(request)
File "/usr/local/lib/python3.10/site-packages/connexion/decorators/parameter.py", line 120, in wrapper
return function(**kwargs)
File "/usr/local/lib/python3.10/site-packages/foca/utils/logging.py", line 61, in _wrapper
response = fn(*args, **kwargs)
File "/app/pro_wes/ga4gh/wes/controllers.py", line 64, in RunWorkflow
response = workflow_run.run_workflow(
File "/app/pro_wes/ga4gh/wes/workflow_runs.py", line 81, in run_workflow
document.run_log.request = self._validate_run_request(
File "/app/pro_wes/ga4gh/wes/workflow_runs.py", line 468, in _validate_run_request
model_instance = RunRequest(**dict_atomic)
File "pydantic/main.py", line 339, in pydantic.main.BaseModel.__init__
File "pydantic/main.py", line 1102, in pydantic.main.validate_model
File "/app/pro_wes/ga4gh/wes/models.py", line 195, in workflow_type_and_version_supported
raise NoSuitableEngine(
pro_wes.exceptions.NoSuitableEngine: 400 Bad Request: No suitable workflow engine known for workflow type 'CWL' and version 'v1.0'; supported workflow engines: {'additionalProp1': {'workflow_type_version': ['string']}, 'additionalProp2': {'workflow_type_version': ['string']}, 'additionalProp3': {'workflow_type_version': ['string']}} [foca.errors.exceptions]
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Related Issues (20)
- chore: check status of endpoints HOT 1
- fix: docker-compose deployment fails
- feat: support workflow engine (version) fields HOT 1
- feat: WES 1.0.1 compliance
- feat: WES 1.1.0 compliance
- feat: use WES 1.0.1 specs
- feat: use WES 1.0.0. specs
- feat: add middleware handler
- feat: add WES compatibility middleware
- ci: check code format with Black
- ci: check for code lints with Pylint
- ci: check types with mypy
- feat: add full support for service info fields
- test: provide unit tests for all code
- fix: storage unavailable at app startup
- fix: next_page_token when runs exhaust HOT 2
- fix: response datatype mismatch
- cancel endpoint not working HOT 5
- fix: broker forces connection closure HOT 8
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