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crossspeciesworkflow

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).

ffindex_soedinglab

hh-suite

Remote protein homology detection suite.

lrrpredictor_v1

LRRpredictor detects LRR motifs within leucine rich repeats proteins.

mmtk

molmodel

MolModel is the C++ molecular-modeling front-end for Simbody.

msa-viewer

Modular BioJS compoment for a multiple sequence alignment

nlrexpress

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

openmm-1

predict_property

Predict protein local properties using sequence or profile information.

raptorx-ss8

Protein 8-class secondary structure prediction

raptorx_property_fast

RaptorX-Property: a Standalone Package for Protein Structure Property Prediction

simbody

High-performance C++ multibody dynamics/physics library for simulating articulated biomechanical and mechanical systems like vehicles, robots, and the human skeleton.

tests

various tests

tgt_package

Generate A3M and TGT file from a given sequence in FASTA format.