Comments (7)
munanning
commented on July 23, 2024
whats more，can i use the N4 in sitk to replace it in ants？Thanks very much
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ellisdg
commented on July 23, 2024
Yes, you can use the bias field correction in SimpleITK. That's how I had it setup in my code originally, but it seemed to take a bit longer.
Have you tried running N4BiasFieldCorrection from the command line? If the ANTs binaries are in the PATH, then you should be able to run any ANTs executable on the command line.
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munanning
commented on July 23, 2024
um, in the command the N4BiasFieldCorrection works, maybe I forgot to install the python wrapper? I'll have a try
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munanning
commented on July 23, 2024
Sorry, I failed again.
Do you remember how you installed your ANTs,aha? Just cmake it and let it download the IKT itself?
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ellisdg
commented on July 23, 2024
The problem seems to be that when you are running the python script, the
ANTs bin directory is not in you PATH environmental variable. I think you
have ANTs installed correctly.
…On Wed, May 3, 2017 at 7:37 AM, godissaw ***@***.***> wrote:
Sorry, I failed again.
Do you remember how you installed your ANTs,aha? Just cmake it and let it
download the IKT itself?
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munanning
commented on July 23, 2024
hhh, you should be right, but I deleted it XD.
That's right, I will try it again.
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munanning
commented on July 23, 2024
I succeeded to convert, but I came across another issues, lol.
This could be closed, thants a lot~~~
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Related Issues (20)
- Request of Requirements.txt HOT 7
- dice和Hausdorff95
- Is this a multi-channel unet network？ HOT 2
- How to get score? HOT 8
- 10-fold cross-validation on the training set. HOT 5
- Organization HOT 3
- I’d like to know the isensee2017 and isensee2017_model are two 3DUNet? HOT 2
- load_subject_ids(config) HOT 3
- evaluate 3dunet with pytorch HOT 3
- TypeError: __init__() missing 1 required positional argument: 'dtype' HOT 1
- hi i want to use your pretrained model but i get 0.3 for dice how i can get your result ? HOT 1
- Dice score of MMWHS dataset HOT 1
- the shape fo image and labels? HOT 2
- Valued Error on BraTS20 Training HOT 6
- scripts problems HOT 9
- problems in cross validation training HOT 8
- About Evaluation metrics for BraTS example HOT 3
- KeyError: 'config' during evaluation on brats example HOT 4
- I didn't make any changes. I couldn't find the file when I ran the sample file. HOT 2
- An error occurred during the evaluation HOT 2
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