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alps

Bash script to compute DTI-ALPS

amico

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

assemblynet

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

blast-ct

Brain Lesion Analysis and Segmentation Tool for Computed Tomography

brainhance

Command-line tool to perform MRI upsampling via SuperResolution GANS

clinical-super-mri

Code for "Deep Attention Super-Resolution of Brain Magnetic Resonance Images Acquired Under Clinical Protocols".

cnn_ucl_mssg

CNN_UCL_MSSG

cornn_tractography

Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

curriculum

deepbleed

DeepBleed: 3D Volumetric Intracranial Hemorrhage Segmentation for Clinical Trials

deepdti

DeepDTI Tutorial

deeplearning-playground

Deep Learning courses, tutorials and examples with TensorFlow and PyTorch

deepneuro

A deep learning python package for neuroimaging data. Made by:

deepneuroseg

Deep-learning Tool for White Matter (WM) lesions and Claustrum structure segmentation in brain magnetic resonance imaging (MRI).

dkmri

Reproducible and efficient diffusion kurtosis imaging in Python.

dl-direct

DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation

dmri-rcnn

Diffusion MRI Recurrent CNN for Angular Super-resolution

dti-noddi

DTI-NODDI: Create NODDI maps from DTI (FA and MD or L1, L2, and L3)

dti_preproc

preprocessing scripts for diffusion imaging

eloydelas.github.io

fatbacpc

Brain Imaging Accessoires: Fully automatic tilting of brainscans to Anterior Commissure - Posterior Commissure line (fatbACPC).

freesurfer-freesurfer-dev-mri_wmhsynthseg

Project at Harvard (HMS and MGH) for Deep Learning-powered WMH quantification. Please refer to the official website for more recent information.

graymatter_swissknife

Gray matter microstructure models estimator for diffusion MRI

hd-ms-lesions

Automated deep learning based Multiple Sklerosis brain lesions segmentation

hdngan

The keras implementation for HDnGAN (Hybrid Denoising Generative Adversarial Network)

intensity-normalization

normalize the intensities of various MR image modalities

interconverting-t1w-to-t2w-in-mri-using-cyclegan

In this group project of deep-learning course, we demonstrate implementation of CycleGan on upper airway and brain imaging. By applying GAN, we generate synthetic T2 weighted image from T1 weighted images.

inversesr

[Early Accepted at MICCAI 2023] Pytorch Code of "InverseSR: 3D Brain MRI Super-Resolution Using a Latent Diffusion Model"

ironsmithqsm

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.

kul_neuroimaging_tools