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airflow

AirFlow is a system to programmatically author, schedule and monitor data pipelines.

amazon-dsstne

Deep Scalable Sparse Tensor Network Engine (DSSTNE) is an Amazon developed library for building Deep Learning (DL) machine learning (ML) models

arduino-makefile

Makefile for Arduino sketches. It defines the workflows for compiling code, flashing it to Arduino and even communicating through Serial.

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

bc

Template for Software Carpentry bootcamp site repository.

bedtools-protocols

berkeley

The Hacker Within at the University of California - Berkeley

bioinformaticalgorithms

Spectrum of implementations; according to Bioinformatics Algorithms: an Active Learning Approach by

bioruby-ucsc-api

Ruby UCSC API: An API for the UCSC Genome Database

canova

General Vectorization Lib for Machine Learning Tools

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

cellprofiler

CellProfiler is open-source cellular image analysis software.

cellprofiler-analyst

Software for exploring and analyzing large, high-dimensional image-derived data.

clearvolume

ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. With ClearVolume you can see live on your screen the stacks acquired by your microscope instead of waiting for offline post-processing to give you an intuitive and comprehensive view on your data.

clinvar

Parsing ClinVar data

clusteringreview

Code in Clustering Review Ronan et al. 2016

code

Source Code for Go In Action examples

compvisproject

Automate Image Analysis

cookbook-code

Recipes of the IPython Cookbook, the definitive guide to high-performance scientific computing and data science in Python

course-collaboration-travel-plans

coursera

Data sets and scripts for Coursera Big Data Specialization.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

d-lab--text-analysis-workshop

Scripts and data for D-Lab text analysis workshop

datasciencecoursera

Contains projects from the Data Science Track

datascienceresources

Open Source Data Science Resources.

datasharing

The Leek group guide to data sharing

deeplearning

Deep Learning (Python, C/C++, Java, Scala)

deeplearningai

Implementations for the deeplearning.ai course

deeplearningtutorials

Deep Learning Tutorial notes and code. See the wiki for more info.

denovotargetcapture

Pipeline for de novo Targeted Capture