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Comments (3)

g-soletta avatar g-soletta commented on July 30, 2024

Did you try using enaGroupGet with these accession codes?

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Manishemblebi avatar Manishemblebi commented on July 30, 2024

Hi @Jigyasa3 ,

Can you please confirm if you are getting the same error for both the command. I can download the fastq files using your second command -./enaDataGet --format fastq ERX4643323.
Can you please check SSL configuration if error related to SSL ( please check README.md).
We had issue with FTP server and should work now. Please try again.

I am able to reproduce the ERROR: Invalid accession provided for "./enaDataGet --format fastq SAMEA7499160" command. There is and issue on verifying the accession. I will fix and push the changes.

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Jigyasa3 avatar Jigyasa3 commented on July 30, 2024

Hi @Manishemblebi ,

Sorry, I forgot to reply! The enaDataGet command works perfectly! I am using the bio project id and do not get an error.
code-/flash/BourguignonU/DB/enaBrowserTools-1.1.0/python3/enaGroupGet --group read --format fastq PRJEB41002
Thank you!

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