Related Issues (20)
- Unable to run the pipeline. invalid jar file error HOT 3
- 6 days stuck on task=atac.read_genome_tsv:-1, retry=0, status=Running
- More than 10 replicates HOT 3
- Encode-atac-seq-pipeline environment can't be found?
- [Question]: Do reads need to be deduped before FRiP calculation HOT 6
- Invalid MEMLIMIT unit value with LSF jobs on Linux
- two replicates and the combined have different signal
- --read-len selection
- Memory Saving: too many large files?
- The pipeline stalled at "chip.read_genome_tsv" for local backend HOT 2
- Differences in qc when validating installation HOT 3
- Failed on fastqs having identical filename but different path HOT 3
- Confirming that separate conditions/treatments should be analyzed by separate pipelines HOT 2
- Don't need to trim adapters
- Add --ntasks-per-node or --exclusive option for your multi-process jobs.
- bam files with replicates HOT 1
- If the pipeline can be used when data is from other platforms (eg: DNBSEQ-G400). HOT 1
- Discrepancy between signal p-value and fold change bigwig tracks around the open regions
- How to set the seed when subsampling reads HOT 1
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