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agr_schemas

A repository of JSON schemas for incorporating data into the Alliance of Genome Resources.

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics (did a fork to add some crystal implementations))

bioperl-live

Core BioPerl 1.x code

blobtoolkit-docker

blobtools2

Redesigning BlobTools to support interactive data exploration

bmalayi-id-app

An very basic AppEngine app to sync curation between the centers. [as in zero styling of the pages].

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

btk_sequences_to_remove

cactus2hal

Convert progressive cactus database into a hal file

curation_stats

quick hack for curation stats

docker-apollo

:whale: Apollo 2.X Docker Image

eg-web-common

modules/files required to set up any of the EG genome browsers

elixir-pragdave

for pragdaves elixir exercises

ensembl

The Ensembl Core Perl API and SQL schema

ensj-healthcheck

Ensembl's Automated QC Framework

genblastg_patch

patched version of genblastg v.139 of the Jack Chen lab

homebrew

The missing package manager for OS X.

makehub

Fully automated generation of UCSC assembly hubs

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nameserver2

nameserver version 2

nextflow_sandbox

for the ERGA tutorial

pretextmap

Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.

randomstuff

rapid-curation-2.0

TPF-less rapid curation of genomes

ruby-ensembl-api

A ruby API to the Ensembl database

sdust

Symmetric DUST for finding low-complexity regions in DNA sequences

test-datasets

Test data to be used for automated testing with the nf-core pipelines

tetools

Dfam Transposable Element Tools Docker container.

varus

RNA-Seq sampling