ethanbass Goto Github PK

amfinder-apple-silicon

The Automatic Mycorrhiza Finder (AMFinder) allows for automatic computer vision-based identification and quantification of AM fungal colonisation and intraradical hyphal structures on ink-stained root images using convolutional neural networks.

chromatographr

Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

chromconverter

Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)

chromconverterextratests

Extra test files for chromConverter package

covr

Test coverage reports for R

drat

Sample drat repository for easy forking and bootstrapping

entab

* -> TSV

ethanbass

Config files for my GitHub profile.

ethanbass.github.io

ethanbass.r-universe.dev

R universe

export_auto

Macro and instructions to export raw data from chemstation as CSV files.

gcalignr

Simple peak alignment for gas-chromatography data in R

ggtukey

Easily add compact letter display (i.e. "tukey letters") to ggplot figures

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

metams

data processing for MS-based metabolomics

mspcompiler

Compile Mass Spectral Libraries from Various Sources

mzinspectr

Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.

pcatest

R package PCAtest for evaluating the statistical significance of PCA analysis, selecting number of significant PC axes, and testing the contributions of the variables to those PCs.

platereadr

Package for analysis plate reader data.

ptw

Parametric Time Warping

pyham

rams

R-based access to Mass-Spectrometry data

regress

Gaussian Linear Models with Linear Covariance Structure

shinychromviewer

Shiny gadget for interactively viewing 3D chromatograms

skyrms

A Python library for the analysis of signaling games

vpdtw

Variable Penalty Dynamic Time Warping

zerenebatchr

Utility for batch processing images in Zerene Stacker