ethanholleman Goto Github PK

298lab10

201B Lab

500k_fib

Txt file containing the first 500,000 fibonacci numbers just for fun, calculated with the included python script.

adarcolab

Repo for in vitro ADAR deamination of R-loops project related files

aquascope

autocomplete

Fig adds autocomplete to your terminal.

bioblender21

Blender plugin to process biological data and molecular work.

bisanger

Estimate bisulfite conversion freqency from Sanger sequencing data

bomb-buster

Python program to solve modules of Keep Talking and Nobody Explodes game

bprna

bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure

bst-227-fall-2021

Notes and scratchwork for BST-227: Machine learning for genomics

casanger

Snakemake workflow for visualization of Cas9 nickase validation via Sanger sequencing

cb_mini_project

Comp 388 Mini Project

cd-hit-helper

Python scripts to make the usage and data interpretation from the CD-HIT program easier

cdhit

Automatically exported from code.google.com/p/cdhit

city-scrapers

Scrape, standardize and share public meetings from local government websites

cockatoo

A similarity metric for macromolecular crystallization conditions

comp-273

Comp 273 project storage

conda-envs

Conda environments I use

cornoncob

Compare really non-colossal oligonucleotides in bacteria

cow-bell

Collection of python scripts that pull cattle listings from Drover's cattle exchange and post to r/cattleexchange subreddit

cross-rough-atlantic-projects

Blaster Projects

drip-ags-encode

Quick snakemake pipeline to evaluate the proximity of AGS cell DRIP data to various encode features as called by chromHMM

drtransformer

Heuristic cotranscriptional folding using the nearest neighbor energy model.

easyevenodd

The worst possible way to determine if an integer is even or odd in Python

ender3v2s1

This is optimized firmware for Ender3 V2/S1 3D printers: the Ethan Holleman version

ethanholleman.github.io

Source code for Ethan Holleman's personal website.

extended_xtal

Thoughts on potential crystallization screen file format standardization expressed through json schemas

fasta_tools

Small but growing collection of personal python fasta methods with many desinged for use with files from SoyBase.com. Downloadable through pip

filament-holder-dowel-bracket

Basic dowel holder bracket for storing 3D printer filament. My first Fusion 360 design.

flaskscratch

Scratch work with Flask / SQL stuff