eyay Goto Github PK

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

azure-iot-sdk-python

A Python SDK for connecting devices to Microsoft Azure IoT services

ceftools

Tools for manipulating cell expression format (CEF) files

comp-genomics-class

Code and examples for JHU Computational Genomics class

dagdata

Data for the HarvardX courses: PH525x

genomics

Scripts, utilities and programs for genomic bioinformatics.

kallisto

Near-optimal RNA-Seq quantification

labs

Scripts for HarvardX courses: PH525x

nbregression

Bayesian negative binomial generalized linear regression for single-cell RNA-seq

pipipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

rafalib

rrnaseq

sailfish

Rapid Alignment-free Isoform Quantification from RNA-Seq Reads

sccourses

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

smallseq

Pipeline to analyze small RNAs from single-cells

star

RNA-seq aligner

toolbox

Analysis environment for The Cancer Genome Atlas (TCGA)

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly