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abyss

:microscope: Assemble large genomes using short reads

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

bioinformatics-coursera

Bioinformatics

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

cheatsheets

RStudio Cheat Sheets

corise-r-for-ds

CoRise | R for Data Science

filtlong

quality filtering tool for long reads

haps

Human Antigen Presentation Score

hopr

This is the development site for Hands-On Programming with R, a book that teaches how to program in R, with hands-on examples. Read the book at https://rstudio-education.github.io/hopr.

hydrobuddy

An open source program for the calculation of hydroponic nutrient solutions.

isb_course_2022

Materials and presentation for the 2022 ISB Microbiome course.

links

⛓Long Interval Nucleotide K-mer Scaffolder

logistic_regression_demo

minia

Minia is a short-read assembler based on a de Bruijn graph

mixmhc2pred

HLA-II ligand predictor.

peptide-antigen

A deep learning model for peptide antigen profiling

porechop

adapter trimmer for Oxford Nanopore reads

protein_bert

pscnn

salsa

SALSA: A tool to scaffold long read assemblies with Hi-C data

seqsero2

SeqSero2

spades

SPAdes Genome Assembler

sspace_basic

SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension

tuto-euk-de-novo-genome

Tutorial for Eukaryote De Novo Genome

viamd

Visual Interactive Analysis of Molecular Dynamics

zdock-batch-script

The three programs used to execute zdock in batches can be executed in multiple processes.