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bayesfactor

A Matlab package for Bayes Factor statistical analysis

brainpy

BrainPy: a simulation toolbox for researches in computational neuroscience and brain-inspired computation

course-content

Content for NMA Computational Neuroscience course

csfa

Codebase for Cross-Spectral Factor Analysis (Gallagher et al., 2017)

darknet

Windows and Linux version of Darknet Yolo v3 & v2 Neural Networks for object detection (Tensor Cores are used)

deepbehavior

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

dna-to-protein-sequence-in-fasta

hddm

HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).

jsonlab

JSONlab: a toolbox to encode/decode JSON files in MATLAB/Octave

kilosort

Fast spike sorting with drift correction for up to a thousand channels

librealsense

Intel® RealSense™ SDK

matlab-movement-data-labeling-tool

A set of Matlab scipts that can be used synchronize time-series data with videos and manually annotate (label) the data

matlabrealsense

A Matlab app for setting RGB and depth parameters on Intel SR300 cameras.

mountainlab-js

MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting software, but is designed to be more generally applicable.

mountainsort

Spike sorting software

multimodal-rgbdt-video-capturing-and-activity-recognition

A Matlab project for multimodal (color, depth and thermal) video data recording, annotation, and analysis using traditional machine learning methods. The code includes multi-camera calibration and synchronization, human body segmentation, feature point tracking in image sequences, time series analysis, application of multiple machine learning methods.

neeg

An application for controlling up to 16 analog cameras and synchronizing them with Blackrock Microsystems neural data

nway

N-way Toolbox for MATLAB (by Rasmus Bro)

omnivore

record synchronized audio and video

pyhsmm

pylibfreenect2

A python interface for libfreenect2

real_sensible_moseq

Integrating Intel's Realsense cameras to the Moseq pipeline

senz3d-livestream

sift

SIFT is an EEGLAB-compatible toolbox for analysis and visualization of multivariate causality and information flow between sources of electrophysiological (EEG/ECoG/MEG) activity. It consists of a suite of command-line functions with an integrated Graphical User Interface for easy access to multiple features. There are currently six modules: data preprocessing, model fitting and connectivity estimation, statistical analysis, visualization, group analysis, and neuronal data simulation.

simba

SimBA (Simple Behavioral Analysis), a plug-and-play pipeline and GUI for developing supervised behavioral classifiers

stream_sync

A program to synchronize two geographically distributed video streams. Inspired by my girlfriend <3

tech-talk-hierarchical-models

toolbox

Piotr's Image & Video Matlab Toolbox

vcpkg

C++ Library Manager for Windows, Linux, and MacOS