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fatcc's Projects

cnvkit icon cnvkit

Copy number variant detection from targeted DNA sequencing

codex icon codex

A normalization and copy number variation calling procedure for whole exome DNA sequencing data.

codex2 icon codex2

Full-spectrum copy number variation detection by high-throughput DNA sequencing

eig icon eig

Eigen tools by Nick Patterson and Alkes Price lab

genstats icon genstats

Statistics course for JHU Genomic Data Science Sequence

plink-ng icon plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).

tbtools icon tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

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