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adapts

Augments existing or de-novo cell-type signature matrices to deconvolve bulk gene expression data This package expands on the techniques outlined in Newman et al.'s 2015 Nature Methods paper: 'Robust enumeration of cell subsets from tissue expression profiles'. to allow a user to easily add their own cell types (e.g. a tumor specific cell type) to Newman's LM22 or other signature matrix.

adroit

Accurate and robust method to infer complex transcriptome composition

agents

An Open-source Framework for Autonomous Language Agents

appsmith

Low code project to build admin panels, internal tools, and dashboards. Connect to 15+ database integrations.

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

autogen

Enable Next-Gen Large Language Model Applications. Join our Discord: https://discord.gg/pAbnFJrkgZ

autogpt-next-web

🤖 Assemble, configure, and deploy autonomous AI Agents in your browser.一键免费部署你的私人AutoGPT 网页应用

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-rshiny

An awesome R-shiny list!

awesome-shiny-apps-for-statistics

🌟 A curated list of Awesome Shiny Apps for Statistics (ASAS)🌟

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

benchmarking-transcriptomics-deconvolution

Paper can be found here : https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bbab265/6338547

bioqc

Detect tissue heterogeneity in gene expression data with BioQC

bisque

An R toolkit for estimation of cell composition from bulk expression data

bseqsc

Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline

budibase

Budibase is an open-source low-code platform for creating internal apps in minutes. Supports PostgreSQL, MySQL, MSSQL, MongoDB, Rest API, Docker, K8s 🚀

cdseq_r_package

CDSeq R Package

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

cellmix

Read-only mirror of "cellmix" from r-forge SVN.

cellmix-1

chatgpt-clone

ChatGPT interface with better UI

datasciencer

a curated list of R tutorials for Data Science, NLP and Machine Learning

dc3

debcam

decoder

Matlab repository for DECODER

decoderr

Single-sample compartment weight deconvolution for TCGA cancers

deconrnaseq

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DeconRNASeq.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DeconRNASeq.