fefossa Goto Github PK
Name: Fernanda Fossa
Type: User
Bio: Computational Biology | Image analysis. I am interested in quantitative image analysis and open-source tools!
Location: Brazil
Fernanda Fossa's Projects
2023_courseimageanalysis_nanocell
Course about image analysis with materials in English and videos in Portuguese.
cellpainting-gallery
Cell Painting Gallery
cellprofiler
An open-source application for biological image analysis
cellprofiler-plugins
Community-contributed and experimental CellProfiler modules.
core
Core classes and components used by CellProfiler
deepprofiler
Morphological profiling using deep learning
deepprofiler-handbook
Documentation for installing and using of DeepProfiler
distributed-cellprofiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
fefossa.github.io
my personal and professional website
loaddatagenerator
Generates CSV files to be used in LoadData module (CellProfiler).
profiling-recipe
Image-based Profiling Recipe
pycytominer
cytominer python package
scratchassays
Analysis of scratch and wound healing assays using Python. Data were extracted using PyScratch software.
scripts_notebooks_fossa
Scripts used inside notebooks for @fefossa projects. Mainly to generate PhD results.
zerocostdl4mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
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