cmake error when install rgbdslam v2 using install.sh about rgbdslam_v2 HOT 7 CLOSED

Try sudo apt-get install libsuitesparse-dev,
then rebuild g2o and rgbdslam again (either using install.sh or manually)

from rgbdslam_v2.

Somehow g2o is built, but not its cholmod solver. This is confusing. Please provide the output form when g2o is built. Maybe there's a cue as to why that is.

from rgbdslam_v2.

@felixendres Thanks for reply. I have added the output

from rgbdslam_v2.

@felixendres now the cmake process seems good, but another error happens.....

CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o: In function g2o::LinearSolverCSparse<Eigen::Matrix<double, -1, -1, 0, -1, -1> >::solvePattern(g2o::SparseBlockMatrix<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > const&, g2o::SparseBlockMatrix<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&)': graph_manager.cpp:(.text._ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE12solvePatternERNS_17SparseBlockMatrixIS3_EERKSt6vectorISt4pairIiiESaISA_EERKS6_[_ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE12solvePatternERNS_17SparseBlockMatrixIS3_EERKSt6vectorISt4pairIiiESaISA_EERKS6_]+0x67): undefined reference to g2o::csparse_extension::cs_chol_workspace(cs_di_sparse const*, cs_di_symbolic const*, int*, double*)'
CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o: In function g2o::LinearSolverCSparse<Eigen::Matrix<double, -1, -1, 0, -1, -1> >::solveBlocks(double**&, g2o::SparseBlockMatrix<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&)': graph_manager.cpp:(.text._ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE11solveBlocksERPPdRKNS_17SparseBlockMatrixIS3_EE[_ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE11solveBlocksERPPdRKNS_17SparseBlockMatrixIS3_EE]+0xee): undefined reference to g2o::csparse_extension::cs_chol_workspace(cs_di_sparse const*, cs_di_symbolic const*, int*, double*)'
CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o: In function g2o::LinearSolverCSparse<Eigen::Matrix<double, -1, -1, 0, -1, -1> >::solve(g2o::SparseBlockMatrix<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, double*, double*)': graph_manager.cpp:(.text._ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9_[_ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9_]+0xf6): undefined reference to g2o::csparse_extension::cs_cholsolsymb(cs_di_sparse const*, double*, cs_di_symbolic const*, double*, int*)'
graph_manager.cpp:(.text.ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9[ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLin1ELin1ELi0ELin1ELin1EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9]+0x1c6): undefined reference to g2o::csparse_extension::writeCs2Octave(char const*, cs_di_sparse const*, bool)' CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o: In function g2o::LinearSolverCSparse<Eigen::Matrix<double, 6, 6, 0, 6, 6> >::solvePattern(g2o::SparseBlockMatrix<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > const&, g2o::SparseBlockMatrix<Eigen::Matrix<double, 6, 6, 0, 6, 6> > const&)':
graph_manager.cpp:(.text._ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE12solvePatternERNS_17SparseBlockMatrixINS2_IdLin1ELin1ELi0ELin1ELin1EEEEERKSt6vectorISt4pairIiiESaISB_EERKNS5_IS3_EE[_ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE12solvePatternERNS_17SparseBlockMatrixINS2_IdLin1ELin1ELi0ELin1ELin1EEEEERKSt6vectorISt4pairIiiESaISB_EERKNS5_IS3_EE]+0x67): undefined reference to g2o::csparse_extension::cs_chol_workspace(cs_di_sparse const*, cs_di_symbolic const*, int*, double*)' CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o: In function g2o::LinearSolverCSparse<Eigen::Matrix<double, 6, 6, 0, 6, 6> >::solveBlocks(double**&, g2o::SparseBlockMatrix<Eigen::Matrix<double, 6, 6, 0, 6, 6> > const&)':
graph_manager.cpp:(.text._ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE11solveBlocksERPPdRKNS_17SparseBlockMatrixIS3_EE[_ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE11solveBlocksERPPdRKNS_17SparseBlockMatrixIS3_EE]+0xee): undefined reference to g2o::csparse_extension::cs_chol_workspace(cs_di_sparse const*, cs_di_symbolic const*, int*, double*)' CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o: In function g2o::LinearSolverCSparse<Eigen::Matrix<double, 6, 6, 0, 6, 6> >::solve(g2o::SparseBlockMatrix<Eigen::Matrix<double, 6, 6, 0, 6, 6> > const&, double*, double*)':
graph_manager.cpp:(.text.ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9[ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9]+0xf6): undefined reference to g2o::csparse_extension::cs_cholsolsymb(cs_di_sparse const*, double*, cs_di_symbolic const*, double*, int*)' graph_manager.cpp:(.text._ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9_[_ZN3g2o19LinearSolverCSparseIN5Eigen6MatrixIdLi6ELi6ELi0ELi6ELi6EEEE5solveERKNS_17SparseBlockMatrixIS3_EEPdS9_]+0x1c6): undefined reference to g2o::csparse_extension::writeCs2Octave(char const*, cs_di_sparse const*, bool)'
collect2: error: ld returned 1 exit status
rgbdslam/CMakeFiles/rgbdslam.dir/build.make:1544: recipe for target '/home/jack/Code/rgbdslam_catkin_ws/devel/lib/rgbdslam/rgbdslam' failed
make[2]: *** [/home/jack/Code/rgbdslam_catkin_ws/devel/lib/rgbdslam/rgbdslam] Error 1
CMakeFiles/Makefile2:3158: recipe for target 'rgbdslam/CMakeFiles/rgbdslam.dir/all' failed
make[1]: *** [rgbdslam/CMakeFiles/rgbdslam.dir/all] Error 2
Makefile:138: recipe for target 'all' failed
make: *** [all] Error 2
Invoking "make -j2" failed

from rgbdslam_v2.

Oh my. Can you execute VERBOSE=1 catkin_make -C /home/jack/Code/rgbdslam_catkin_ws/ and post the lines of output that contain "-L". VERBOSE=1 catkin_make -C /home/jack/Code/rgbdslam_catkin_ws/|grep -- -L should do that.

from rgbdslam_v2.

@jackj012 Did you resolve your problem? I am getting the exact same errors.

@felixendres Here is the output that you requested (it's all just one line):
/usr/bin/c++ -fopenmp -O3 -DNDEBUG CMakeFiles/rgbdslam.dir/src/moc_qtros.cpp.o CMakeFiles/rgbdslam.dir/src/moc_openni_listener.cpp.o CMakeFiles/rgbdslam.dir/src/moc_qt_gui.cpp.o CMakeFiles/rgbdslam.dir/src/moc_graph_manager.cpp.o CMakeFiles/rgbdslam.dir/src/moc_glviewer.cpp.o CMakeFiles/rgbdslam.dir/src/moc_ros_service_ui.cpp.o CMakeFiles/rgbdslam.dir/src/gicp-fallback.cpp.o CMakeFiles/rgbdslam.dir/src/main.cpp.o CMakeFiles/rgbdslam.dir/src/qtros.cpp.o CMakeFiles/rgbdslam.dir/src/openni_listener.cpp.o CMakeFiles/rgbdslam.dir/src/qt_gui.cpp.o CMakeFiles/rgbdslam.dir/src/node.cpp.o CMakeFiles/rgbdslam.dir/src/glviewer.cpp.o CMakeFiles/rgbdslam.dir/src/parameter_server.cpp.o CMakeFiles/rgbdslam.dir/src/ros_service_ui.cpp.o CMakeFiles/rgbdslam.dir/src/misc.cpp.o CMakeFiles/rgbdslam.dir/src/landmark.cpp.o CMakeFiles/rgbdslam.dir/src/loop_closing.cpp.o CMakeFiles/rgbdslam.dir/src/ColorOctomapServer.cpp.o CMakeFiles/rgbdslam.dir/src/scoped_timer.cpp.o CMakeFiles/rgbdslam.dir/src/icp.cpp.o CMakeFiles/rgbdslam.dir/src/matching_result.cpp.o CMakeFiles/rgbdslam.dir/src/graph_manager.cpp.o CMakeFiles/rgbdslam.dir/src/graph_mgr_io.cpp.o CMakeFiles/rgbdslam.dir/src/graph_manager2.cpp.o CMakeFiles/rgbdslam.dir/src/graph_mgr_odom.cpp.o CMakeFiles/rgbdslam.dir/src/transformation_estimation_euclidean.cpp.o CMakeFiles/rgbdslam.dir/src/transformation_estimation.cpp.o CMakeFiles/rgbdslam.dir/src/header.cpp.o CMakeFiles/rgbdslam.dir/src/covariance_estimation.cpp.o CMakeFiles/rgbdslam.dir/src/feature_adjuster.cpp.o CMakeFiles/rgbdslam.dir/src/features.cpp.o CMakeFiles/rgbdslam.dir/src/sift_gpu_wrapper.cpp.o -o /home/slam/rgbdslam_v2/rgbdslam_catkin_ws/devel/lib/rgbdslam/rgbdslam -L/opt/ros/kinetic/lib -L/home/slam/rgbdslam_v2/rgbdslam_catkin_ws/src/lib -L/home/slam/rgbdslam_v2/rgbdslam_catkin_ws/src/rgbdslam/external/SiftGPU/bin -rdynamic /opt/ros/kinetic/lib/liboctomap.so /opt/ros/kinetic/lib/liboctomath.so /home/slam/rgbdslam_v2/g2ofork/install/lib/libg2o_csparse_extension.so 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/opt/ros/kinetic/lib/libopencv_xobjdetect3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_tracking3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_surface_matching3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_structured_light3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_stereo3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_saliency3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_rgbd3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_reg3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_plot3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_optflow3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_line_descriptor3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_hdf3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_fuzzy3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_dpm3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_dnn3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_datasets3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_cvv3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_ccalib3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_bioinspired3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_bgsegm3.so.3.1.0 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/usr/lib/x86_64-linux-gnu/libvtkParallelMPI4Py-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSMP-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSelection-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkIOVPIC-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkVPIC-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkImagingMath-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkImagingMorphological-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingParallel-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeTypeFontConfig-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkIOFFMPEG-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkIOMPIImage-6.2.so.6.2.0 /usr/lib/x86_64-linux-gnu/libvtkIOGDAL-6.2.so.6.2.0 /opt/ros/kinetic/lib/libdynamic_reconfigure_config_init_mutex.so /opt/ros/kinetic/lib/libnodeletlib.so /opt/ros/kinetic/lib/libbondcpp.so -luuid /opt/ros/kinetic/lib/libimage_transport.so -ltinyxml /opt/ros/kinetic/lib/libclass_loader.so -lPocoFoundation -ldl /opt/ros/kinetic/lib/libroslib.so /opt/ros/kinetic/lib/libcv_bridge.so /opt/ros/kinetic/lib/libopencv_xphoto3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_xobjdetect3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_ximgproc3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_xfeatures2d3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_tracking3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_text3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_surface_matching3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_structured_light3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_stereo3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_saliency3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_rgbd3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_reg3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_plot3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_optflow3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_line_descriptor3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_hdf3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_fuzzy3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_face3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_dpm3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_dnn3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_datasets3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_cvv3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_ccalib3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_bioinspired3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_bgsegm3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_aruco3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_viz3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_videostab3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_videoio3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_video3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_superres3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_stitching3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_shape3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_photo3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_objdetect3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_ml3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_imgproc3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_imgcodecs3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_highgui3.so.3.1.0 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-lboost_date_time -lboost_atomic -lpthread -lconsole_bridge /opt/ros/kinetic/lib/libopencv_ximgproc3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_xfeatures2d3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_shape3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_video3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_objdetect3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_calib3d3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_features2d3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_ml3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_highgui3.so.3.1.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.5.1 /usr/lib/x86_64-linux-gnu/libQt5Concurrent.so.5.5.1 /opt/ros/kinetic/lib/libopencv_videoio3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_imgcodecs3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_imgproc3.so.3.1.0 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.5.1 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.5.1 /opt/ros/kinetic/lib/libopencv_flann3.so.3.1.0 /opt/ros/kinetic/lib/libopencv_core3.so.3.1.0 -Wl,-rpath,/opt/ros/kinetic/lib:/home/slam/rgbdslam_v2/rgbdslam_catkin_ws/src/lib:/home/slam/rgbdslam_v2/rgbdslam_catkin_ws/src/rgbdslam/external/SiftGPU/bin:/home/slam/rgbdslam_v2/g2ofork/install/lib:/usr/lib/x86_64-linux-gnu/hdf5/serial/lib

For reference, I am also running Kinetic (on a fairly fresh Ubuntu 16.04 install) but I have not previously had rgbdslam_v2 installed.

from rgbdslam_v2.

I have managed to solve the problem: After running sudo apt-get install libsuitesparse-dev, it was necessary to remove the two folders generated by install.sh completely and run install.sh again (make clean and catkin_make clean in the two folders was not sufficient).

from rgbdslam_v2.