felixgrunberger Goto Github PK

animated_barchart

Animated bar graphs in R. How a simple animation can (maybe) contribute to a better understanding of data

annogesic

ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes

blog_posts_prep

bookdown

Authoring Books and Technical Documents with R Markdown

bookdown-demo

A minimal book example using bookdown

copr

This is the repository for the manuscript “CopR, a global regulator of transcription to maintain copper homeostasis in Pyrococcus furiosus”.

csamar

diff739

dissertation

This repository contains supplementary files of my dissertation dealing with the genome and transcriptome landscape of Pyrococcus furiosus

felixgrunberger

Config files for my GitHub profile.

felixgrunberger.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

felixgrunberger2.github.io

my personal blog

hscs_pfu

hsr_pfu

hsr_saci

This repository contains code used for the analysis of the heat shock response of the thermoacidophilic Sulfolobus acidocaldarius at the transcriptome and proteom level.

ksga

microbepore

This is the repository for the manuscript “Expanding the transcriptomic toolbox in prokaryotes by Nanopore sequencing of RNA and cDNA molecules.” In this study, we applied and benchmarked all currently available RNA-seq kits from Oxford Nanopore technologies to analyse RNAs in the prokaryotic model organism Escherichia coli K-12.

nanopore_bookdown

nanoraw

native_rnaseq_microbes

Repository containing raw code, detailed description and figures for Nanopore-based native RNA sequencing of prokaryotes

organizar

Tiny package to create a folder structure for a data science project

pyrococcus_reannotation

This Github repository contains code, figures and documentation for reproducing our work published in Frontiers in Microbiology.

rrna_maturation

shiny-nano

shinycv

create beautiful CV with shiny and adminLTE2

sumr

example data for "how to build your first package in R using roxygen, devtools and RStudio