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Hey! Nice to see you.

Welcome to my page!
I'm Yuchen, doctoral student from SKLGE, FDU, currently living in SHANGHAI, CHINA.

Things I code with

huggingface Python R BASH Docker github actions Nodejs

Languages and Frameworks

Python R R

Tools and Environments

VSCode PyCharm Vim Markdown Ubuntu MacOS windows


My github stats

Yuchen's GitHub stats

This week i spent my time on 

Python     6 hrs 32 mins   █████████████████▓░░░░░░░   70.87 %
Text       47 mins         ██░░░░░░░░░░░░░░░░░░░░░░░   08.63 %
Bash       41 mins         ██░░░░░░░░░░░░░░░░░░░░░░░   07.50 %
Other      31 mins         █▒░░░░░░░░░░░░░░░░░░░░░░░   05.70 %
Markdown   20 mins         █░░░░░░░░░░░░░░░░░░░░░░░░   03.79 %

Open source projects

🎁 Projects ⭐ Stars 📚 Forks 🛎 Issues 📬 Pull requests
TRMRNA-seq Analysis Tools for plant smallRNA seq Stars Forks Issues Pull Requests
Analysis tools for qPCR Stars Forks Issues Pull Requests
Analysis tools for miRNA tailing and trimming Stars Forks Issues Pull Requests

My latest posts

🎀 Contributions (GitHub Flow), 🔥 issues, and 🥮 feature requests are most welcome!

💙 If you like my projects, Give them ⭐ and Share it with friends!

Made with ❤️ in China

⚡️Stay awesome!⚡️

Github Stats

Yuchen's Projects

bioinfo-notebook icon bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

bokeh icon bokeh

Interactive Data Visualization in the browser, from Python

chatgpt-next-web icon chatgpt-next-web

One-Click to deploy well-designed ChatGPT web UI on Vercel. 一键拥有你自己的 ChatGPT 网页服务。

dnapi icon dnapi

De novo adapter prediction algorithm for small RNA sequencing data

lncrna-homologs icon lncrna-homologs

datasets and scripts adopted in the paper "Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics"

ncrna-deep icon ncrna-deep

Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"

ngs icon ngs

Scripts for next generation sequencing

ngs-pipeline icon ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

r_example icon r_example

公众号[庄闪闪的成长手册]对应的R资料（代码+数据）

shortstack icon shortstack

ShortStack: Comprehensive annotation and quantification of small RNA genes

shorttracks icon shorttracks

Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM)

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