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awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bamcmp

bedops

:microscope: BEDOPS: high-performance genomic feature operations

biotools

A list of useful bioinformatics resources

chipseq-compare

Comparison of differential chip seq methods and rewriting/porting code along the way.

cnvplot

Plot CNV data with a genome viewer in R

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

diffreps

Differential analysis for ChIP-seq with biological replicates

epic2

Ultraperformant reimplementation of SICER

fastq-shuffle

A shuffle program for FASTQ files

lantern

🔴蓝灯最新版本下载 https://github.com/getlantern/download 🔴 Lantern Latest Download https://github.com/getlantern/download 🔴

macs

MACS -- Model-based Analysis of ChIP-Seq

mutationalpatterns

R package for extracting and visualizing mutational patterns in base substitution catalogues

pipeline

bradner lab computation pipeline scripts

pmsignature

R package for extracting mutation signatures from a list of somatic mutations

rna-seq-analysis

RNAseq analysis notes from Ming Tang

shell_intro_for_bioinformatics_stg

Intro to Shell for Bioinformatics - with STG examples

ssgsea2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms