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asdsc

A pipeline to perform alternative splicing detection and quantification in single cell levels

asja

ASJA: a program for Assembling Splice Junctions Analysis

assc

A pipeline to perform alternative splicing identification and quantification in single cell levels

bbknn

Batch balanced KNN

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

hf

hydrogel-_injection_treatment_for_ischemic_cardiomyopathy-

We performed bulk RNA-seq and snRNA-seq in the ischemic cardiomyopathy rats with hydrogel injection treatment.

ivd_organoid_analysis

Analysis pipeline to process and explore the single-cell RNA-seq of IVD brain organoids

monocle-release

pcreode

An algorithm for mapping cell state transitions.

prada

Prioritization of Regulatory Pathways based on Analysis of RNA Dynamics Alterations

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scanpy_usage

Scanpy use cases.

scimpute

Accurate and robust imputation of scRNA-seq data

scrnaseq-analysis-notes

my scRNAseq analysis notes

snrna-seq_analysis_of_hydrogel-_injection_treatment_for_ischemic_cardiomyopathy

suppa

SUPPA2: Fast quantification of differential splicing

whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

wishbone

Wishbone is an algorithm to align cells along developmental trajectories with branches

wot

Optimal transport for time-course single cell data

zju_dre_patch_seq_analysis

Multimodal single-cell analyses reveal molecular markers of neuronal senescence in human drug-resistant epilepsy