Name: Florian Zwagemaker
Type: User
Company: Center for Infectious Disease Control
Bio: I build software for analyzing viruses at the Dutch National Institute for Public Health and the Environment (RIVM)
@RIVM-bioinformatics
Location: Utrecht, The Netherlands
Florian Zwagemaker's Projects
Pipeline components for real-time phylodynamic analysis
Conda recipes for the bioconda channel.
Parse GFF3 into Pandas dataframes
Documentation site for the Jovian genomics toolkit
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Software package for assigning SARS-CoV-2 genome sequences to global lineages.
adapter trimmer for Oxford Nanopore reads
This is the development home of the workflow management system Snakemake. For general information, see
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome