change structure of output directory about ngs-preprocess HOT 3 CLOSED

{outdir}
├── final_output
│   └── illumina / nanopore / pacbio                       # one directory for each sequencing technology
│       │   └──  all reads in ".fq.gz" format
├── preprocessing_outputs
│   └── illumina / nanopore / pacbio                       # one directory for each sequencing technology
│       │   └──   QC, trimming, filtering, correction, demultiplexing etc. (whenever available)

# files of all samples will be placed inside the QC, trimming, filtering, etc directories. Each file will have the sample ID to make selection easier.

TESTE
├── final_output
│   ├── illumina
│   │   ├── SRR8482585_30X.merged.fq.gz
│   │   ├── SRR8482585_30X_R1.unmerged.fq.gz
│   │   └── SRR8482585_30X_R2.unmerged.fq.gz
│   ├── nanopore
│   │   └── kp_30X.filtered.fq.gz
│   └── pacbio
│       └── lima.bc1018--bc1018.filtered.fq.gz
└── preprocessing_outputs
    ├── illumina
    │   ├── SRR8482585_30X_fastp.html
    │   └── SRR8482585_30X_fastp.json
    ├── nanopore
    │   ├── QC
    │   │   ├── kp_30X_nanoQC
    │   │   ├── kp_30X_nanoplot
    │   │   └── kp_30X_stats
    │   └── porechop
    │       └── kp_30X.trimmed.fq.gz
    └── pacbio
        ├── QC
        │   ├── lima.bc1018--bc1018_nanoQC
        │   ├── lima.bc1018--bc1018_nanoplot
        │   └── lima.bc1018--bc1018_stats
        └── bam2fastq
            ├── lima.bc1018--bc1018.bam.pbi
            └── lima.bc1018--bc1018.fq.gz