Comments (3)
alexlenail
commented on July 3, 2024
@AmandaKedaigle I'm tentatively assigning this to you. I've written some of the boilerplate logic, but I think you're much more of an expert on these datatypes than I am. Let's talk either this evening or tomorrow about how we want to handle this, and who should end up doing it.
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alexlenail
commented on July 3, 2024
@AmandaKedaigle possible to have this done by end of day Monday?
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alexlenail
commented on July 3, 2024
Looks like we've previously done some good thinking on this, and although it's not up and running, since it isn't a priority, I'll let it go for now. We'd happily accept contributions on this front.
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Related Issues (20)
- Python version compatability HOT 2
- MotifMap has transfac IDs HOT 1
- MotifMap takes too long to load into RAM -- could we use a database? HOT 1
- Map Motifs to Gene Symbols HOT 2
- TF Regression Error HOT 9
- Include TF "targets" in output HOT 3
- check files exist HOT 1
- What does motif score mean? HOT 14
- Garnet file stuck loading HOT 1
- Bedtools can perform map_peaks function in ~1 min HOT 7
- Comparison: Garnet file generation HOT 1
- TF regression drop duplicates HOT 4
- `TF_regression` not working properly on server (or locally either) HOT 2
- Filter out unreasonable regressions HOT 2
- GarNet File has inconsistent naming convention for record: HOT 5
- mm9, mm10 garnet file construction notebooks HOT 3
- Window optional param HOT 3
- Idea for speed optimization.
- TODO: update garnet construction function HOT 3
- TODO: autofetch reference files HOT 1
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