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bmcgough avatar bmcgough commented on June 25, 2024

This is the list of packages from Dirk's list that exist in Python3:

alabaster
alembic
appdirs
APScheduler
argh
astroid
awscli
astropy
autopep8
awscli
Babel
beautifulsoup4
beautifulsoup4
bitarray
bitstring
bokeh
boto3
botocore
burrito
blaze
bleach
blessings
blinker
blist
bokeh
boto3
botocore
bpython
bz2file
CacheControl
certifi
cffi
chardet
click
cliff
cliff
colorama
ConfigArgParse
configobj
contextlib2
cryptography
cutadapt
Cython
cytoolz
daemonize
darkslide
dbf
deap
debtcollector
decorator
distributed
dnspython
docutils
dominate
drmaa
easygui
easygui
ecdsa
enum34
fastcache
fasteners
Flask
freezer
funcsigs
future
gitdb2
GitPython
google
greenlet
h5py
html5lib
HeapDict
html5lib
httplib2
idna
inflection
ipaddress
ipdb
ipykernel
ipython
iso8601
isort
itsdangerous
jedi
Jinja2
jmespath
jsonpatch
jsonpointer
jsonschema
keystoneauth1
keyring
keystoneauth1
lazr.uri
ldap3
ldap3
locket
lockfile
lxml
lxml
Mako
Markdown
MarkupSafe
matplotlib
matplotlib
mccabe
mock
monotonic
mpi4py
natsort
natsort
netaddr
netifaces
networkx
nltk
nose
npyscreen
numpy
numpy
numpydoc
oauth
olefile
openstacksdk
oslo.concurrency
oslo.config
oslo.context
oslo.i18n
odo
olefile
openstacksdk
oslo.concurrency
oslo.config
oslo.context
oslo.i18n
oslo.log
oslo.serialization
oslo.utils
oslo.serialization
oslo.utils
packaging
pandas
paramiko
parse
pathlib2
path.py
pathtools
patsy
pbr
pep8
pexpect
pickleshare
Pillow
pip
ply
positional
prettytable
progressbar33
protobuf
psutil
psycopg2
ptyprocess
py
pyasn1
pycosat
pycparser
pycrypto
pycurl
pyflakes
PyGithub
Pygments
PyGreSQL
pyinotify
pylint
pymongo
pymssql
PyMySQL
pyodbc
pyOpenSSL
pyparsing
pyqi
pysam
pyserial
pytest
pytz
PyVCF
pyxdg
PyYAML
qcli
qiime
pyzmq
qrcode
QtAwesome
qtconsole
QtPy
redis
reportlab
requests
requests
requestsexceptions
rfc3986
rpy2
roman
rsa
s3transfer
scandir
scipy
serializable
setuptools
shove
SecretStorage
setuptools
simplegeneric
simplejson
singledispatch
six
smmap2
sortedcollections
sortedcontainers
Sphinx
spyder
SQLAlchemy
stdeb
stevedore
stuf
sympy
tblib
terminado
toolz
tornado
traitlets
ujson
uritemplate
urwid
utils
virtualenv
visitor
wadllib
watchdog
wheel
WTForms
xlrd
xopen
ZConfig
zmq
zope.interface

from easybuild-life-sciences.

fizwit avatar fizwit commented on June 25, 2024

Python 3 is very different from 2.7. It's easy to do the diff, but finding proper vetted 3.x packages takes much trail and error.
These modules to not work with 3.6
functools32 adds 3.2 functions to 2.7
colorbrewer
cogent
pyqi (2.7 and 3.3 only!)
python-memcached (3.4 support; does not load with 3.6 - submitted issue)
qiime (2.7 only) Quantitative Insights Into Microbial Ecology - needs updating
seqmagick (2.7 only) Tools for converting and modifying sequence files from the command-line - opened an issue - fhcrc package!
subprocess32 - backport of 3.2 too 2.x
qcli not ready for 3.0
pyastro, load error with 3.6 - filed issue
emperor fails import from skbio import OrdinationResults
ImportError: cannot import name 'OrdinationResults'

from easybuild-life-sciences.

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