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aws.ec2

AWS EC2 Client Package

freezecoder.github.io

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

google-genomics-pipeline-runner-examples

Examples of Google Genomics Pipelines run via google-genomics-pipeline-runner.

htmlwidgetsgallery

mutsneedle

R package for viewing mutation needle lollipop plot widgets

navitemplateapp

Shiny app for navigation within the app and heirachies. Link within same shiny app.

nextflow_ngs_novoalign

A Simple Illumina Alignment and Variant Calling Pipeline for NGS using Nextflow and Docker

nfws

NGS-Facility-Workflow-Suite. snakemake rules and workflows for bioinformatics applications

ngsrview

Simple file format viewer for NGS variant data

novoalignhadoopstreaming

Running novoalign on the hadoop infrastucture using Streaming

novoamplicon

Novoalign Paired-end illumina amplicon analysis pipeline

portfolio

rmarkdowntemplates

shinynavscroll

A scrolling navbar page for Shiny apps.

snappaneltemplate

A shiny template using gridster to get multiple items draggable on a page

sol-eng-public

spoon-knife

This repo is for demonstration purposes only.

tbutils

Utility functions for tibanna on aws

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

token-vesting

A Vesting Contract for the Solana Blockchain

umiviewer

Viewer for UMI files used with DropSeq and single-cell analysis

vcftotable

Convert variant call format to TSV table using open source tools

vcloudetl

scripts for loading variant data into Elasticsearch

viewfusion

View fusion event by circos plot

wdl

Workflow Description Language - Specification and Implementations