Comments (2)
@mh1111 take a look at the answer here: #120.
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Thanks a lot @nh13. It totally makes sense.
Cheers,
MH
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Related Issues (20)
- Compose a `scalafmt` configuration that applies Nils and Tim's preferred conventions HOT 1
- Snapshot releases are broken
- Make ZipperBams hanlde program name collisions HOT 1
- variant calling with paired-end sequencing HOT 3
- Samples processed in different lanes HOT 4
- 2 Alignment steps HOT 1
- feature request: add option to FilterBam to write filtered reads to separate file
- GroupReadsByUmi filtered reads number does not cover all filtered reads? HOT 1
- CallMolecularConsensus Fails HOT 5
- Too up-regulated scores after fgbio CallDuplexConsensusReads HOT 2
- Option to keep MolecularConsensusReads in CallDuplexConsensusReads HOT 3
- ZipperBams failed. Error: processed all unmapped reads but there are mapped reads remaining to be read. HOT 3
- GroupReadsByUmi groups reads with or without the same end. HOT 2
- bug: the logic for the PileupBuilder `includeMapPositionsOutsideFrInsert` filter is wrong HOT 6
- Non existent path error when using FastqToBam with links HOT 1
- The `fgbio` conda package should not require R dependencies HOT 2
- FilterConsensusReads results too little reads compared raw fastq OR uBAM file
- Warn or raise an exception when CollectDuplexSeqMetrics is run on a consensus BAM
- {readname} did not have a primary R1 record. (GroupReadsByUmi) HOT 4
- How to specify read structure with variable UMI length?
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