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Gabe Foley's Projects

ancestral_agreement icon ancestral_agreement

Calculate the level of agreement between two ancestral reconstructions from differing tools

ancestralcost icon ancestralcost

Calculate the parsimony cost of having an ancestral residue implied by an alignment and tree

gget icon gget

🧬 gget enables efficient querying of genomic reference databases to support the analysis of sequencing data.

phylo_island icon phylo_island

Tool for performing phylogenetic and ancestral studies on multi-subunit proteins

po_viterbi icon po_viterbi

Example code for running Partial Order Viterbi alignment method

seqscrub icon seqscrub

Website for cleaning FASTA headers and newick strings

tree_fam icon tree_fam

Process the trees and alignments available in the TreeFam database

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