galithil Goto Github PK

advent_of_code_2018

https://adventofcode.com/2018

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bisect-me

Git bisect exercise.

charon

Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.

covid_2021

de_novo_scilife

django_2fa_example

django_graph-webapp

flowcell_parser

Collection of python scripts to parse Illumina Xten output

frc_align

Computes FRC from SAM/BAM file and not from afg files

gaffophone

Reddit bot that makes noise.

gali_uttt_bot

galithil.github.io

genologics

Python interface to the GenoLogics LIMS server via its REST API.

genologics_sql

Python interface for the Genologics Postgres database.

genomics-dashboard

gesthopitaljava

Automatically exported from code.google.com/p/gesthopitaljava

gildedrose-refactoring-kata

Starting code for the GildedRose Refactoring Kata in many programming languages.

git-rebase-squash-exercise

Git rebase and commit squashing exercise.

github-workflow-exercise

Exercise to practice collaborative GitHub workflow.

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

ktane_python

lims2db

lims_dashboard

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_clarity

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

ngi-rnaseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

ngi_dashboards

SciLifeLab NGI Dashboard Code

ngi_pipeline

Code driving the production pipeline at SciLifeLab (not yet in production)

playing-card-recognition

Naïve Playing Card Recognition using OpenCV / Python