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aux_scripts

Auxiliary scripts

bam2vec

Map the content of a BAM file into a vector space.

bin

Bliss

bliss

Repo for bliss pipeline

cell2vec

cnv

Pipeline to detect copy number variations

complexity

Profile library complexity

complexity_estimation

Scripts to estimate complexity of a library

contrastive-learning-nlp-papers

Paper List for Contrastive Learning for Natural Language Processing

cutseq

Pipeline for restseq

fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

fastq2cloud

Create a point-cloud representation of a genomic corpus.

gene2vec

genomic representation

genemodel

create gene models

genome_segmentation

Segment the genome using unsupervised entropy-based methods.

genomicnlp

Genomic Natural Language Processing

gpseq-hic

Combining gpseq and hic dataset

graviti

GRAph VIsualization of TIssue sections

ifish

TDA for fish data

ivisith

SSF project

lungcancerheterogeneity

mps_randlinalg

Randomized linear algebra algorithms adapted to matrix product states calculations.

nucleai

Morphological heterogeneity analysis of whole slide images.

qfilter

Filter fastq reads by the quality of specifies bases

randomized_linear_algebra_mps

readcountlp

Read count language processing

reduced_representation

Study reduced representation of the genome

refgenomelp

Covered reference genome language processing

repo_bag_of_features

Use TDA to study breast cancer images.

rest2doc

Given a list of cutsites produces genomic documents starting at each cutsite