Comments (2)
123sjbsjb
commented on September 6, 2024
This seems to be an issue with the biopython package. I checked the "biopython/Bio/PDB/Entity. py" section of biopython.
They has been changed from
PDBConstructionException ("% s defined twice"% entity_id)to
If self. has_id (entity_id):
Raise PDBConstructionException (f "{entity_id} defined twice")I upgraded the version of biopython from1.76 to 1.83, although it can run, the MOAD dataset still displays a large number of "{entity_id} defined twices". This is completely different from the PDBbind dataset. Why is this?
from diffdock.
Related Issues (20)
- a problem with running Graphical UI HOT 2
- Training large models using train.py
- error while running the inference example HOT 3
- installation problem/ running interface python : No module named 'torch' (How to install torch and its dependencies properly?) HOT 1
- Running inference on multiple GPUS HOT 2
- _LinAlgErr when running inference HOT 2
- Installation failed (Openfold, CUDA issues) HOT 4
- Failed on different complexes for inference.py on CPU and GPU are different for different batch size HOT 4
- Running without docker HOT 1
- errors when to run inference.py with vesion 1.1.2 HOT 1
- Side chains relevance in DiffDock predictions
- bfloat16 version of Diffdock
- Float division by zero on CUDA memory outage
- Web UI 'Samples Per Complex' Input Not Reflecting Changes
- ValueError: No edges and no nodes HOT 2
- Logger index error out of range
- Error : terminate called after throwing an instance of 'std::system_error'
- Fail to run multi complexe with csv boolean index did not match indexed array along dimension 0
- Parameters of all models
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from diffdock.