Comments (3)
dustine32
commented on June 22, 2024
@ukemi sent an example GPAD of how contributor will come in when we get the export GPAD for the import. An example line:
MGI MGI:98956 enables GO:0005102 MGI:MGI:4834177|GO_REF:0000096 ECO:0000266 UniProtKB:P56704 20160118 MGI contributor=http://orcid.org/0000-0001-5501-853X|contributor=http://orcid.org/0000-0001-7476-6306|comment=blah blah blah
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dustine32
commented on June 22, 2024
Contributor could be coming in on GPAD line through either contributor (ORCID), curator_uri (ORCID), or curator_name (string name). Additional orcid and date fields will be added to GPAD spec when it's updated.
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dustine32
commented on June 22, 2024
Will need annotation_properties column to be available in the parsed data from ontobio's GpadParser. biolink/ontobio#288
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Related Issues (20)
- Update extension validation rules TSV
- Update extension validation rules for acts_o_population_of HOT 3
- Create test files for additional annotation metadata HOT 31
- No extension is an island HOT 4
- Resolve Shex failures in MGI annotations due to invalid identifiers for binding input HOT 38
- add taxon metadata for each model HOT 5
- Create test files for WB import HOT 12
- Write translated models out in N-Quads format HOT 1
- Proteoforms shouldn't be split into separate models HOT 14
- Handle pipe-separation in translation of with/from field HOT 1
- Handling interacting taxon data
- Add date and contributor to ALL annotation individuals? Not just evidence and Axiom? HOT 4
- Emit comment in annotation properties HOT 1
- Collapse comma-delimited objects of chain relations
- Add providedBy to all individuals HOT 2
- Add gene symbol to model title HOT 14
- Param to set modelstate HOT 1
- Comment missing some text from the GPAD HOT 1
- Set import model states to production so annotations are in GPAD outputs from dev HOT 5
- Processing annotation contributors for multiple GPAD lines with single annotation id HOT 5
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