Comments (1)
@vanaukenk @ukemi I can probably piggyback onto this ticket.
Basic outputs of import code should be:
- Translated model TTL files - Great!
- GPAD lines filtered out - "the leftovers/remainders"
- Report of invalid (and thus untranslated) extensions
Outputs 2 and 3 can likely be attached to the PRs into noctua-dev and I can also put the simple counts of filtered lines/invalid extensions in those tiny report I've already been outputting. Example:
source_path: http://www.informatics.jax.org/downloads/reports/mgi.gpa.gz
download_date: Thu Sep 26 10:09:33 2019
header_date: 09/25/2019
# of models generated: 19736
# GPAD lines filtered out: #####
# invalid annotation extensions: #####
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Related Issues (20)
- Update extension validation rules TSV
- Update extension validation rules for acts_o_population_of HOT 3
- Create test files for additional annotation metadata HOT 31
- No extension is an island HOT 4
- Resolve Shex failures in MGI annotations due to invalid identifiers for binding input HOT 38
- add taxon metadata for each model HOT 5
- Create test files for WB import HOT 12
- Write translated models out in N-Quads format HOT 1
- Proteoforms shouldn't be split into separate models HOT 14
- Handle pipe-separation in translation of with/from field HOT 1
- Handling interacting taxon data
- Add date and contributor to ALL annotation individuals? Not just evidence and Axiom? HOT 4
- Emit comment in annotation properties HOT 1
- Collapse comma-delimited objects of chain relations
- Add providedBy to all individuals HOT 2
- Add gene symbol to model title HOT 14
- Param to set modelstate HOT 1
- Comment missing some text from the GPAD HOT 1
- Set import model states to production so annotations are in GPAD outputs from dev HOT 5
- Processing annotation contributors for multiple GPAD lines with single annotation id HOT 5
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