Comments (6)
The rules for BP are lines 9-16 of the spreadsheet. I now see that they are not implemented. Sorry for the false alarm.
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@ukemi @vanaukenk I have a test model loaded on my server, which is now finally accessible outside USC!
http://68.181.46.18:8910/editor/graph/gomodel:9b110628-d19d-462b-8169-bbf40c0cf187
This has three examples of "acts_upstream_of_or_within" being translated. I'll find some more examples of the positive and negative effect relations being translated. If those also look good, I can run the latest code on the whole lot of WB/MGI and PR them to noctua-dev.
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HI @dustine32 just curious why http://identifiers.org/mgi/MGI:1206591 isn't being shown as Bik Mmus ? The URI looks right in the OWL, so its probably not important for this issue. I'm guessing maybe you didn't load neo in your dev server (because it takes a while) ? (Can't remember if its neo or if its GOLR or something that grabs those labels.)
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Yep, correct, it's NEO not being loaded on my server that's preventing the labels from displaying. I can probably switch back to loading it since it doesn't really take a crazy amount of time to load.
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@dustine32 - the test model looks good. Let's run the latest code on the WB and MGI annotation sets and see how they look!
Thx.
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@vanaukenk Latest set of WB/MGI models are loaded into noctua-dev. This PR has some stats on source files used.
Here's our example model (MGI:MGI:1206591) from above in noctua-dev:
http://noctua-dev.berkeleybop.org/editor/graph/gomodel:6ac737bd-6178-4867-8e4a-4de91c02a366
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Related Issues (20)
- Update extension validation rules TSV
- Update extension validation rules for acts_o_population_of HOT 3
- Create test files for additional annotation metadata HOT 31
- No extension is an island HOT 4
- Resolve Shex failures in MGI annotations due to invalid identifiers for binding input HOT 38
- add taxon metadata for each model HOT 5
- Create test files for WB import HOT 12
- Write translated models out in N-Quads format HOT 1
- Proteoforms shouldn't be split into separate models HOT 14
- Handle pipe-separation in translation of with/from field HOT 1
- Handling interacting taxon data
- Add date and contributor to ALL annotation individuals? Not just evidence and Axiom? HOT 4
- Emit comment in annotation properties HOT 1
- Collapse comma-delimited objects of chain relations
- Add providedBy to all individuals HOT 2
- Add gene symbol to model title HOT 14
- Param to set modelstate HOT 1
- Comment missing some text from the GPAD HOT 1
- Set import model states to production so annotations are in GPAD outputs from dev HOT 5
- Processing annotation contributors for multiple GPAD lines with single annotation id HOT 5
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