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ukemi avatar ukemi commented on September 24, 2024

The rules for BP are lines 9-16 of the spreadsheet. I now see that they are not implemented. Sorry for the false alarm.

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dustine32 avatar dustine32 commented on September 24, 2024

@ukemi @vanaukenk I have a test model loaded on my server, which is now finally accessible outside USC!
http://68.181.46.18:8910/editor/graph/gomodel:9b110628-d19d-462b-8169-bbf40c0cf187

This has three examples of "acts_upstream_of_or_within" being translated. I'll find some more examples of the positive and negative effect relations being translated. If those also look good, I can run the latest code on the whole lot of WB/MGI and PR them to noctua-dev.

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goodb avatar goodb commented on September 24, 2024

HI @dustine32 just curious why http://identifiers.org/mgi/MGI:1206591 isn't being shown as Bik Mmus ? The URI looks right in the OWL, so its probably not important for this issue. I'm guessing maybe you didn't load neo in your dev server (because it takes a while) ? (Can't remember if its neo or if its GOLR or something that grabs those labels.)

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dustine32 avatar dustine32 commented on September 24, 2024

Yep, correct, it's NEO not being loaded on my server that's preventing the labels from displaying. I can probably switch back to loading it since it doesn't really take a crazy amount of time to load.

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vanaukenk avatar vanaukenk commented on September 24, 2024

@dustine32 - the test model looks good. Let's run the latest code on the WB and MGI annotation sets and see how they look!

Thx.

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dustine32 avatar dustine32 commented on September 24, 2024

@vanaukenk Latest set of WB/MGI models are loaded into noctua-dev. This PR has some stats on source files used.

Here's our example model (MGI:MGI:1206591) from above in noctua-dev:
http://noctua-dev.berkeleybop.org/editor/graph/gomodel:6ac737bd-6178-4867-8e4a-4de91c02a366

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