Comments (4)
hi there, Thanks for your interest in enrichM,
Looks like you need to replace the --annotate_output (which takes a directory as input) with --annotation_matrix. Like so:
enrichm enrichment --output MGII_enrichment --annotation_matrix mgii_annotation/ko_frequency_table.tsv --metadata metadata.txt --threshold 32 --ko --force
Please give this a go and let me know if this works for you!
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hi, thanks for your reply.
i just did what you recommended, and there's error again: enrichm enrichment: error: the following arguments are required: --annotate_output
i use "EnrichM 0.5.0", is it the latest version?
bin_enrichm.e52670.txt
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I see, this is an issue with the way enrichM parses the inputs. if you try
enrichm enrichment --output MGII_enrichment --annotate_output mgii_annotation --metadata metadata.txt --threshold 32 --ko --force
It should hopefully work. I'll work on a fix that addresses this error. Thanks for flagging this.
try the above command and let me know here if it doesnt work
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Good news! it worked when you just give the folder.
Thanks for your help!
bin_enrichm.o5268.txt
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Related Issues (20)
- Custom Database
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