enrichm enrichment error about enrichm HOT 4 OPEN

hi there, Thanks for your interest in enrichM,

Looks like you need to replace the --annotate_output (which takes a directory as input) with --annotation_matrix. Like so:

enrichm enrichment --output MGII_enrichment --annotation_matrix mgii_annotation/ko_frequency_table.tsv --metadata metadata.txt --threshold 32 --ko --force

Please give this a go and let me know if this works for you!

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hi, thanks for your reply.
i just did what you recommended, and there's error again: enrichm enrichment: error: the following arguments are required: --annotate_output
i use "EnrichM 0.5.0", is it the latest version?
bin_enrichm.e52670.txt

from enrichm.

I see, this is an issue with the way enrichM parses the inputs. if you try

enrichm enrichment --output MGII_enrichment --annotate_output mgii_annotation --metadata metadata.txt --threshold 32 --ko --force

It should hopefully work. I'll work on a fix that addresses this error. Thanks for flagging this.

try the above command and let me know here if it doesnt work

from enrichm.

Good news！ it worked when you just give the folder.
Thanks for your help!
bin_enrichm.o5268.txt

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