Comments (8)
Hi there,
Thank you for using enrichm!
Apologies for the unclear error message, would you be able to try and run enrichm annotate with an annotate option (either --ko --cazy --tigrfam or --pfam) and let me know if this error still occurs?
Thanks,
Joel
from enrichm.
Thanks for the reply. I tried. Same issue.
from enrichm.
Would you please be able to confirm for me that you are using version 0.5.0?
from enrichm.
Yes. I installed using conda and then upgraded to 0.5.0 using pip. It looks it did not look for the database.
from enrichm.
I have the same issue with 0.5.0 but. Is it solved?Thanks
from enrichm.
Hi,
the same issue here, is this being solved? thanks.
Version: 0.5.0
Traceback (most recent call last):
File "/home/dell/.conda/envs/enrichm/bin/enrichm", line 342, in <module>
run.run_enrichm(args, sys.argv)
File "/home/dell/.conda/envs/enrichm/lib/python3.7/site-packages/enrichm/run.py", line 305, in run_enrichm
args.threads, args.parallel, args.suffix, args.light)
File "/home/dell/.conda/envs/enrichm/lib/python3.7/site-packages/enrichm/annotate.py", line 122, in __init__
self.databases = Databases()
File "/home/dell/.conda/envs/enrichm/lib/python3.7/site-packages/enrichm/databases.py", line 98, in __init__
self.KO_DB = os.path.join(self.REF_DIR, self.KO_DB_NAME + self.DMND_SUFFIX)
AttributeError: 'Databases' object has no attribute 'REF_DIR'
from enrichm.
i do not think it's solved. Still cannot use it.
from enrichm.
AttributeError: 'Databases' object has no attribute 'REF_DIR' same problem
from enrichm.
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