Issue running graftm create using docker about graftm HOT 6 OPEN

Hi Erin,

Does removing the /Users/e/Documents/graftm_test/ bit from before bsh_taxonomy_file2.txt help in the docker run? I suspect that directory isn't the same inside docker as it is outside. Could be wrong tho.

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Hi,
Thanks for the very rapid response.
No, it doesn't change anything, generates the same error message.
I've tried playing around with adding --workdir so that I can set a specific working directory inside but that also doesn't seem to help.

Thanks,
Erin

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Np.

I see you only had pwd not pwd surrounded by ` as was intended. Not sure if that helps.

The other thing to consider here is that the docker releases have fallen behind, for boring technical reasons. It is probably more straightforward to use conda, if possible?

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