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Kyle Austin Gervers's Projects

amplicon_seq icon amplicon_seq

conda + renv = easily deployed microbiome analysis environments

amptk icon amptk

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

canopy icon canopy

Douglas-fir needles + fungi + metabarcoding + LiDAR = insights into canopy community dynamics

climatenar icon climatenar

My fork of the ClimateNAr R package by author and maintainer Tongli Wang

dmm icon dmm

Code for simulation experiment testing the performance of Dirichlet-multinomial modelling for data of varying attributes.

dwca_hunter icon dwca_hunter

Downloads biodiversity resources from internet and converts them to DarwinCore Archive files

ecocopula icon ecocopula

R package to find species interactions from co-occurrence data

fun-gi icon fun-gi

hamPCR + Douglas-fir + needle fungi

gllvm icon gllvm

Generalized Linear Latent Variable Models

if-unite-insdc icon if-unite-insdc

Index Fungorum + UNITE + INSDC = better taxonomic reference sequences

inext icon inext

R package for interpolation and extrapolation

lulu icon lulu

r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

openair icon openair

Tools for air quality data analysis

rarefy-demo icon rarefy-demo

How to use and misuse rarefaction for estimation of alpha-diversity

spreading-correction icon spreading-correction

Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

topodistance icon topodistance

topoDistance: an R package for calculating topographic paths and distances

worldmet icon worldmet

Easy access to NOAA Integrated Surface Database (ISD) surface meteorological observations

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