Geoff Fudenberg's Projects
Sequential regulatory activity predictions with deep convolutional neural networks.
Conda recipes for the bioconda channel.
Pandas utilities for tab-delimited and other genomic data files
A cool place to store your Hi-C
The tools for your .cool's
Contains files for the deep learning in genomics primer.
A web server that allows people to play Hanab, a cooperative card game of logic and reasoning.
Analysis of Chip-seq using Hi-C features
A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
Polymer simulations of chromosomes and generating "in silico" Hi-C maps