ggfhf Goto Github PK

ddrad-cork-hyb

Workflow Bash and R scripts used to analyze demultiplexed SE reads from a ddRADseq experiment in Quercus suber, Quercus ilex, and their hybrids.

ddradseqtools

Software package for in silico simulation and testing of double digest RADseq experiments.

degolds

Differential Expression analysis pipelines benchmarking workflow based on Gold Standard construction

gtimputation

gtimputation (Genotype Imputation) is an application designed to determine the genotypes of missing data in a VCF or tabular format file using a machine learning procedure based on self-organizing maps (SOMs)

locisegregation

R scripts to analyze the distortion of the mendelian segregation patterns in Q. ilex x suber hybrid progenies

modelbark

ngscloud

Now NGScloud is deprecated. You must use NGScloud2 at https://github.com/GGFHF/NGScloud2/.

ngscloud2

NGScloud2, a major version of NGScloud, provides a user-friendly front-end to operate the EC2 resources and to control bioinformatic analysis workflows of NGS experiments in a modular way. The application allows to optimize the cost-efficiency ratio of NGS experiments when appropriate computational facilities are not available.

ngshelper

NGShelper is a set of tools useful to performance some tasks related to NGS analysis.

raddesigner

Bioinformatic workflow to choose the optimal genotyping strategy using RADs (ddRADseq-GBS) from individual-replicates pilot studies

rnaseqperformancetest

Files corresponding to RNA-seq performance tests of NGScloud.

simhyb2

SimHyb2 is a educational and research java-based software to simulate virtual individuals from mixed hybridizing populations

toa

TOA (Taxonomy-oriented Annotation) establishes workflows geared towards plant species that automate the extraction of information from genomic databases and the annotation of sequences.