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Mahdi Ghorbani's Projects

3dlinker icon 3dlinker

An E(3) Equivariant Variational Autoencoder for Molecular Linker Design

allostery-nri icon allostery-nri

code for learning allosteric point-to-point communication in protein dynamics using an efficient Neural relational inference

ampgen icon ampgen

Attention based variational auto encoder for antimicrobial peptide generation

chemcpa icon chemcpa

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

deeptime icon deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

diffsbdd icon diffsbdd

A Euclidean diffusion model for structure-based drug design.

siamese-triplet icon siamese-triplet

Siamese and triplet networks with online pair/triplet mining in PyTorch

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