giovannellilab Goto Github PK

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barosa_et_al_aeolian_shallow_vent_diversity

Data and code to reproduce the analysis of the 16S rRNA dataset and geochemistry of the shallow water vents of the Aeolian Islands

barry_et_al_south_america_helium_carbon

Data and code for the Barry et al 2022 paper on the Helium-Carbon systematic across the CVZ and SVZ

basili_et_al_central_america_convergent_margin

Repository containing the data relative to the paper "Shifts in subsurface microbial community structure along the geological features of the Central American Volcanic Arc"

biogeochemistry_and_oxidoreductases_metals

Repository containing the data relative to the paper "Oxidoreductases and metal cofactors in the functioning of Earth"

biometal_transporters

Environmental diversity, distribution and evolution of microbial metal ion transport systems

book_microbiology_extreme_env

Repository for the open book on the Microbiology of Extreme Environments

ch22_metagenomes

Metagenomic analysis of 32 samples of filtered geothermal fluids collected in Chile (2022)

chile22_expedition_report

cordone_et_al_ross_sea

Datasets and code for the Cordone et al. paper describing the microbial diversity int he surface waters of the Ross Sea, Antarctica

cordone_et_al_southern_ocean_microbial_diversity

Datasets and code for the Cordone et al. paper describing the microbial diversity in the surface waters crossing the ocean fronts from New Zealand to the Ross Sea, Antarctica

dada2_pipeline

Dada2 pipeline used in the Giovannelli Lab

docker-protocolbuilder

A Docker repository intended to help me compile and build electronic books.

field_3d-printed_peristaltic_pump

Plans for the portable 3D printed peristaltic pump for field use developed in the Giovannelli Lab

geochem

Geochemistry pipeline for processing and visualising data from IRMS, IC and ICP-MS

geomosaic

A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

giovannellilab.github.io

Book for documentation, tutorial and protocols of the Giovannelli Lab.

giovannellilab_protocols

Protocols used in the Giovannelli Lab

giovannellilab_sops

Repository containing the Standard Operating Procedures for the analysis carried out in the Giovannelli Lab at the University of Naples Federico II, Italy

github_testing

An empty repository to experiment with github workflow

glab_ggplot2_theme

The Giovannelli Lab ggplot2 tgheme

glab_ghost_repository

Glab ghost repository to enable projects functions

glab_shared_codebase

The repo and wiki containing all the Giovannelli Lab codebase. Cookbook for already solved code issues in our lab.

grl22_expedition_report

Data from the GHOST GRL22 Leg 1 Expedition report

hydecarb

Website for the PRIN2022 project HYDECRAB (MUR 20224YR3AZ)

idearg_2020

Eco-evolutionary approach to identification and isolation of freshwater bacteria harbouring antibiotic resistance genes - IdeARG

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

montemagno_et_al_shark_microbiome

Repository containing the data relative to the paper "Shark microbiome analysis demonstrates unique microbial communities in two distinct Mediterranean Sea shark species"

polygonplot

Repository describing the Polygons plot for multivariate data range visualization

pra_meltingice

Repository for the Italian PRA MeltingICE project