Comments (4)
Hi @poojasingh09, sorry for the delay—an email filter caught this issue notification accidentally.
Can you give me more information about the XML file (how was it generated, etc)? Was this an XML file that jgi-query
created during a previous run?
Also, did you let jgi-query
retry the specific download mentioned above? It makes four separate attempts in an effort to overcome some of the more common reasons a file won't download. Even if it fails all four attempts, it will occasionally work if you try it again afterward—this has to do with how JGI stores certain files as tape archives, which are pulled out of the archive when requested but are often delayed for that reason.
from jgi-query.
@poojasingh09 I'm going to close this now for inactivity, but if this is still an issue for you please feel free to update.
from jgi-query.
Hi @glarue,
I'm getting this error very often and almost every time I run the script.
curl: (28) Operation timed out after 120000 milliseconds with 0 bytes received
Is it because of my internet connection? What could you suggest to fix it?
from jgi-query.
Hi @raulmireles,
The first thing to do would be to see if I can reproduce the problem. Can you first create a new issue on GitHub with an example of the command that's giving you trouble? I will then check it on my end.
from jgi-query.
Related Issues (11)
- 10 Minute time limit HOT 7
- downloading multiple datasets in bulk? HOT 1
- failed when using jgi-query to download files wanted HOT 5
- Please change to reference current JGI signon server. HOT 1
- Downloading error: curl: (28) HOT 2
- Incorporate into Biopython HOT 3
- Downloading bacterial genomes in bulk with submission IDs HOT 3
- Downloading the fungal database HOT 3
- Error downloading the fungal database. HOT 2
- Files on tape can't be downloaded
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from jgi-query.