Glastonbury Group's Projects
Design a tool to optimize the parameters of any command line tool
convert your 23andme raw file to VCF
Rapid GPU accelerated segmentation and counting of adipocytes from histology slides.
Ansible tasks for java8
Ansible role for setting up a python development system
15 million images - 5000 multi-class classification task!
Cell type estimation in bulk Adipose tissue RNA-seq
All convolution operators replaced with coordinate convolutions
Pytorch implementation of CoordConv introduced in 'An intriguing failing of convolutional neural networks and the CoordConv solution' paper. (https://arxiv.org/pdf/1807.03247.pdf)
Cosinor models to test for seasonality effects
Implementation of recent Deep Learning papers
Keras implementation of Densenet Deep Learning Model
What's the best error I can achieve on CIFAR10 using minimal parameters?
Many trans-eQTLs can be phantom cis-eQTL effects driven by multimapping reads due to gene families, paralogues and regions of high sequence similarity across the genome.
Single MZ twins are often genotyped. However, duplication of genotypes for un-genotyped co-twin is usually required.
Create clusters of VMs on the cloud and configure them with Ansible
Keras implementation of a gradient reversal layer for the Tensorflow backend
Convert a GTF gencode annotation to BED12
NHGRI GWAS catalogue parser
Data Science Bowl 2017 Competition
Kaggle Quora Questions Pairs Competition (14th place solution)
Keras Implementation of Google's Inception-V4 Architecture (includes Keras compatible pre-trained weights)
Multi-GPU training for Keras
Kind PyTorch Tutorial for beginners
Machine learning algorithms