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Hello / Howzit / Molo πŸ‘‹

My name is Glenn Moncrieff and I am a Geospatial Data Scientist and ML Engineer based in Cape Town, South Africa.

Cape Town ISS

My background is in geography and ecology, and nowadays I spend most of my time observing the earth with satellites and machine learning πŸ›°οΈ

I train models and conduct research to analyse environmental data 🌏 Most of my effort is focussed on addressing the biodiversity and climate crises.

I am most comfortable coding in Python and R.

My research has looked at a range of environmental issues like mapping plant biomes, modelling water loss to invasive plants, rapidly detecting habitat loss in shurblands or forecasting post-fire vegetation recovery. I also wrote about climate change impacts on African ecosystems in the Africa chapter of the latest IPCC report.

I like to see science turned into real-world applications and software that the community can use. So I spend most of my time turning research into packages or operational products. Some fun software that I have created or contributed to:

  • Global Renosterveld Watch: Deploys trained tensorflow models to GCP via Apache Beam to predict shrubland habitat loss.

  • hyper-iap: Mapping alien invasive plants from hyperspectral imagery using deep learning.

  • saeonobspy: An Python package to query and downloaded environmental data from the SAEON observations database

  • Ecological Monitoring and Management Application: An environmental data processing pipeline for forecasting satellite observed postfire vegetation recovery

My time is currently primarily devoted to these projects

  • πŸ”₯ Ecosystem Monitoring for Management Application Combining Earth observations in situ observations, and Bayesian ecological forecasting models to characterise vegetation state and predict postfire recovery in a highly biodiverse shrublands. We are producing an operational system to support the decisions of land mangers and help them identify ecosystem degradation from a range of causes
  • 🌈 Mapping species and simulating virtual plants as part of NASAs first biodiversity focussed field camping, the Biodiversity Survey of the Cape. BioScape is collecting high resolution hyperspectral, thermal and Lidar data of the Cape Floristic Region to test the limits of what we can learn about diversity from space.

Want to connect?

  • πŸ’» Get in touch to chat about projects with a geospatial, earth observation or biodiversity focus: [email protected]

  • πŸ“« Follow me on Twitter as @glennwithtwons, or read a post on my website

Glenn Moncrieff's Projects

alu_cloud icon alu_cloud

files for ALU cloud computing HLT assignment

bfast-explorer icon bfast-explorer

Breakpoint detection of Landsat pixel time series via BFAST-based algorithms, provided as a Shiny app

bfastspatial icon bfastspatial

Set of utilities and wrappers to perform change detection on satellite image time-series (Landsat and MODIS). Includes pre-processing steps and functions for spatial implementation of bfastmonitor change detection and post processing of the results.

catchments_demo icon catchments_demo

Code and data to demonstrate best practice for reproducible workflows in R. Uses data from the South African paired catchment experiments as an example

cedar-project icon cedar-project

Monitoring and mapping the critically endangered Clanwilliam Cedar using deep learning and remote sensing

crop-type-mapping icon crop-type-mapping

Source code to Rußwurm & Kârner 2019. Self-Attention for Raw Optical Satellite Time Series Classification

day_zero icon day_zero

exploring the signal of the 2015-2019 drought on vegetation in the western cape

demeter icon demeter

A land use land cover disaggregation and change detection model

dgvmtools icon dgvmtools

R package for processing, analysing and visualising ouput from Dynamic Global vegetation Models (DGVMs)

earthengine-workflow icon earthengine-workflow

Deploy Tensorflow models to Google Cloud Platform for automating predictions on Earth Engine imagery

ee-tensorflow-ts icon ee-tensorflow-ts

python notebooks for tensorflow time-series analysis with google earth engine

eo-flow icon eo-flow

Collection of TensorFlow 2.0 code for Earth Observation applications

fieldrnn icon fieldrnn

Temporal Vegetation Classification with Recurrent Neural Networks

geebap icon geebap

Best Available Pixel (BAP) composite in Google Earth Engine (GEE) using the Python API

hyper-iap icon hyper-iap

Classification of alien invasive plants from hyperspectral data from point localities

ieee_tgrs_spectralformer icon ieee_tgrs_spectralformer

Danfeng Hong, Zhu Han, Jing Yao, Lianru Gao, Bing Zhang, Antonio Plaza, Jocelyn Chanussot. Spectralformer: Rethinking hyperspectral image classification with transformers, IEEE Transactions on Geoscience and Remote Sensing (TGRS), 2021

jointgaussianchangedetector icon jointgaussianchangedetector

Python package implementing change detection and change point estimation using a joint distribution estimated from a training set of similar signals

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