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apptainer

Apptainer: Application containers for Linux

apptainer-userdocs

apptainer.org

ascatngs

Somatic copy number analysis using WGS paired end wholegenome sequencing

ascender-install

asciinema

Terminal session recorder

barcelona-crg-singularity-workshop

Materials for a 1.5 hour overview of Singularity

busybox

cgpbattenberg

Battenberg algorithm and associated implementation script

cni

Container Network Interface - networking for Linux containers

conque-gdb

GDB command line interface and terminal emulator in (G)Vim.

dr-eval

Some of the most convoluted (useful) MATLAB code ever written

easybuild

Singularity definition file for an EasyBuild container

eb-singularity

Stuff related to integrating EasyBuild & Singularity

examples

files and instructions for creating and using example containers from the sylabs.io blog

freesurfer

recon-all from FreeSurfer

gmake-4.4-test

A quick way to reproduce gmake/Apptainer error

gpu4singularity

Add GPU support to your Singularity container!

headshot-maker

files for https://cloud.sylabs.io/library/godlovedc/sylabs-tools/headshot-maker

home

some of my personal conf files

jupyter-example

Short example of running jupyter notebook in Singularity container

keras

Singularity definition files for Keras

libnvidia-container

NVIDIA container runtime library

lolcow

lolcow-installer

Singularity definition file for an example showing how to "install" binaries that run within a container.

matlab2r

Working on converting some MATLAB fitting functions to R

ohpc

OpenHPC Integration, Packaging, and Test Repo

pipeline

bradner lab computation pipeline scripts

rnaseq

Singularity definition files for a container with some RNA sequencing tools

salad

If you fork this repo... you'll have a salad fork.