Comments (1)
Here are several things I can think of that you can try:
- Not sure whether it makes sense to convert your viral RNA genome to its reverse complement because we normally align our samples to cDNA(aka. transcriptome) for
xpore
andm6anet
f5c eventalign
has an--rna
option, I know that it points to the kmer model, but not sure whether that would convert the reference kmer to reverse complement
Thanks!
Best wishes,
Yuk Kei
from m6anet.
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