gokceneraslan Goto Github PK

anndata

Annotated data.

anndata2ri

Convert between AnnData and SingleCellExperiment

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-rnn

Recurrent Neural Network - A curated list of resources dedicated to RNN

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bhc

Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.

biclustlib

A Python library of biclustering algorithms, evaluation measures and datasets.

bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

bioframe

Pandas utilities for tab-delimited and other genomic data files

biorxiv-sanity-preserver

Web interface for browsing, search and filtering recent biorxiv submissions

cellphonedb

code

scripts

cookiecutter-pypackage

Cookiecutter template for a Python package.

dec

deepwas

Implementation of the DeepWAS workflow

dietnet

Diet networks in TensorFlow

diffxpy

Differential expression analysis for single-cell RNA-seq data.

dirichletmultinomial

Dirichlet Multinomial Mixture Distribution by Christopher Quince, Martin Morgan and Gökcen Eraslan

disentangling-vae

Experiments for understanding disentanglement in VAE latent representations

dizimag

Dizimag addon for XBMC

dnaconvnet-notebook

Jupyter notebook for the application of convolutional neural nets to toy DNA sequence data

docs.targetvalidation.org

dorothea-py

Dorothea package in Python

dotfiles-homesick

Dotfiles to be used with homesick

eigon

Bindings for eigen

enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

enstop

Ensemble topic modelling with pLSA

fit_mvpolya

Dirichlet-Multinomial (Multivariate Polya) Maximum Likelihood Estimate in Python

fit_nbinom

Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B

forceatlas2

Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX