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analysing-crispr-screens-with-edger

This repository includes bookdown documents showing how to use edgeR Bioconductor package to analyse CRISPR screens.

blogdown_attempt

This repository is created for me to store my R files while learning how to use blogdown.

cbioportal_data_manipulation

This repo includes file to download data from cbioportal including clinical information

cpython

The Python programming language

crispra-screen-analysis

This repo contains R scripts used to generate the figures in "A novel CRISPR activation mouse enables modelling of aggressive lymphoma and interrogation of venetoclax resistance."

curespr

What the Package Does (One Line, Title Case)

fry-shiny

fry-shiny-dashboard

This repo includes shiny app code for FRY using dashboards.

fry-simulations

This repository includes Rmarkdown files to visualise FRY simulations.

gene-explorer-shiny

This repo includes the shiny code for exploring genes' distributions from a genomic platform. Expression values of the genes are expected to be provided by the user.

glucocorticoids-gse124817

This repository explores and preprocess RNA-seq data sets from https://www.nature.com/articles/s41586-019-1019-4?WT.ec_id=NATURE-201903&sap-outbound-id=A6DF5A45BCDD72D6BC0407A50E325FFF69B5BE74 using XenoSplit.

mastering-shiny

Mastering Shiny: a book

mytalk-ab3acbs2016

This repository includes the presentation for AB3ACBS 2016 Conference.

mytalk-user2016

The talk I gave at useR 2016 conference can be found in this repository.

mytalk-wehibioinf2019-qtqda

This repository includes my slides for WEHI Bioinformatics division seminar on 17th of September.

neclawehi

This project includes files worked on at WEHI during Necla's 8 month of visit

qtqda

This package provides an R function to classify RNA-Seq gene expression profiles.

r-ladies-shiny-workshop

This repo consists of the presentation for R-Ladies Melbourne shiny workshop.

xenosplit

Mapping pipeline